Variant report

Variant	rs1471428
Chromosome Location	chr9:96109349-96109350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2258457	0.91[AMR][1000 genomes]
rs2927572	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2995992	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3001454	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9696550	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96107400-96113000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr9:96107600-96111600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr9:96108000-96113000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr9:96108400-96109400	Active TSS	Fetal Brain Female	brain
5	chr9:96108400-96109600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:96109000-96109400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
7	chr9:96109000-96109400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
8	chr9:96109000-96109600	Enhancers	Fetal Brain Male	brain
9	chr9:96109200-96109400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr9:96109200-96109400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:96109200-96109400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:96109200-96109400	Enhancers	Brain Hippocampus Middle	brain
13	chr9:96109200-96109400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr9:96109200-96109800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr9:96109200-96109800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:96109200-96109800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr9:96109200-96110600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:96109200-96110600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:96109200-96127800	Weak transcription	Right Atrium	heart

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