Variant report

Variant	rs2995992
Chromosome Location	chr9:96102431-96102432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96093481..96095896-chr9:96100994..96102832,2	MCF-7	breast:
2	chr9:96102234..96103753-chr9:96106109..96107624,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10761210	0.86[CHB][hapmap]
rs10761211	0.81[ASN][1000 genomes]
rs10821107	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10821108	0.91[ASN][1000 genomes]
rs10821109	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10992701	0.81[CHB][hapmap]
rs10992708	0.85[ASN][1000 genomes]
rs10992709	0.85[ASN][1000 genomes]
rs11521661	0.81[ASN][1000 genomes]
rs12347460	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685091	0.85[ASN][1000 genomes]
rs1471428	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2927572	0.83[EUR][1000 genomes]
rs2991377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2991384	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2995995	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2995996	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2995997	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2995998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3001454	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3933798	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs62574460	0.82[ASN][1000 genomes]
rs7042763	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9696550	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96098600-96108000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:96098800-96105000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr9:96099000-96102800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr9:96099000-96103400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr9:96099800-96102600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr9:96100000-96103000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr9:96100200-96102800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr9:96101400-96107200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:96101800-96102800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
10	chr9:96101800-96103200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:96102000-96102800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:96102200-96102600	Bivalent Enhancer	HepG2	liver
13	chr9:96102200-96102800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr9:96102200-96103200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:96102400-96102600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:96102400-96102800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:96102400-96102800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr9:96102400-96102800	ZNF genes & repeats	Fetal Brain Male	brain
19	chr9:96102400-96102800	Enhancers	Gastric	stomach

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