Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:96093481..96095896-chr9:96100994..96102832,2	MCF-7	breast:
2	chr9:96094285..96095889-chr9:96205467..96207499,2	MCF-7	breast:
3	chr9:96093858..96095483-chr9:96278870..96281860,2	MCF-7	breast:
4	chr9:96091189..96096083-chr9:96211395..96215893,15	MCF-7	breast:
5	chr9:96080130..96081909-chr9:96092886..96095724,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10761210	0.86[CHB][hapmap]
rs10821107	0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10821108	0.94[ASN][1000 genomes]
rs10821109	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs10992701	0.81[CHB][hapmap]
rs10992708	0.82[ASN][1000 genomes]
rs10992709	0.82[ASN][1000 genomes]
rs12347460	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12685091	0.82[ASN][1000 genomes]
rs2927572	0.82[EUR][1000 genomes]
rs2991377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2991384	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2995992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2995995	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2995996	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2995998	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3001454	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3933798	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs62574460	0.85[ASN][1000 genomes]
rs7042763	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9696550	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96068400-96100400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:96081000-96100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96083200-96100400	Weak transcription	Fetal Stomach	stomach
4	chr9:96089200-96099400	Weak transcription	Fetal Brain Female	brain
5	chr9:96091400-96096400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:96092000-96096400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96093400-96095600	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr9:96093400-96096200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr9:96093400-96096400	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr9:96094000-96095400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr9:96094000-96099800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:96094400-96095400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr9:96094400-96099000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:96094800-96096800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:96095000-96100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:96095200-96099800	Weak transcription	Rectal Mucosa Donor 29	rectum

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