Variant report
Variant | rs1472078 |
---|---|
Chromosome Location | chr11:107125616-107125617 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10749888 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs10749889 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10749892 | 0.86[AMR][1000 genomes] |
rs10789591 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10789595 | 0.85[AMR][1000 genomes] |
rs10789596 | 0.86[AMR][1000 genomes] |
rs10890666 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10890668 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1352735 | 0.81[EUR][1000 genomes] |
rs1490942 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1559669 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1808472 | 0.85[AMR][1000 genomes] |
rs1817798 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1834330 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1844748 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1844750 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1863260 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1863261 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1907403 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1991197 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2017907 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2059462 | 0.82[EUR][1000 genomes] |
rs2098846 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2113926 | 0.86[AMR][1000 genomes] |
rs2113927 | 0.86[AMR][1000 genomes] |
rs2130823 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2194844 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2355841 | 0.86[AMR][1000 genomes] |
rs2355842 | 0.86[AMR][1000 genomes] |
rs2883480 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2883633 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs4265572 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs473520 | 0.86[JPT][hapmap] |
rs4753787 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4754200 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4754208 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs4754212 | 0.86[AMR][1000 genomes] |
rs478067 | 0.86[JPT][hapmap] |
rs501088 | 0.86[AMR][1000 genomes] |
rs512574 | 0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes] |
rs525996 | 0.92[JPT][hapmap];0.81[AMR][1000 genomes] |
rs541277 | 0.86[AMR][1000 genomes] |
rs550882 | 0.85[AMR][1000 genomes] |
rs551168 | 0.86[JPT][hapmap];0.82[AMR][1000 genomes] |
rs556528 | 0.85[JPT][hapmap] |
rs557972 | 0.86[AMR][1000 genomes] |
rs559269 | 0.86[JPT][hapmap] |
rs580913 | 0.86[JPT][hapmap];0.81[AMR][1000 genomes] |
rs582790 | 0.81[AMR][1000 genomes] |
rs583319 | 0.81[AMR][1000 genomes] |
rs594772 | 0.86[AMR][1000 genomes] |
rs595336 | 0.81[AMR][1000 genomes] |
rs595852 | 0.81[AMR][1000 genomes] |
rs596843 | 0.81[AMR][1000 genomes] |
rs602628 | 0.86[AMR][1000 genomes] |
rs603487 | 0.86[JPT][hapmap];0.85[AMR][1000 genomes] |
rs604211 | 0.86[JPT][hapmap] |
rs607151 | 0.85[AMR][1000 genomes] |
rs610203 | 0.85[AMR][1000 genomes] |
rs615998 | 0.86[AMR][1000 genomes] |
rs621677 | 0.83[JPT][hapmap];0.85[AMR][1000 genomes] |
rs637179 | 0.81[AMR][1000 genomes] |
rs637181 | 0.81[AMR][1000 genomes] |
rs638571 | 0.81[AMR][1000 genomes] |
rs639437 | 0.85[JPT][hapmap];0.81[AMR][1000 genomes] |
rs650699 | 0.86[JPT][hapmap];0.81[AMR][1000 genomes] |
rs651620 | 0.86[JPT][hapmap];0.81[AMR][1000 genomes] |
rs6588950 | 0.82[EUR][1000 genomes] |
rs6588961 | 0.86[AMR][1000 genomes] |
rs661889 | 0.85[JPT][hapmap] |
rs664485 | 0.84[AMR][1000 genomes] |
rs67186604 | 0.84[AMR][1000 genomes] |
rs682042 | 0.86[JPT][hapmap] |
rs682590 | 0.86[JPT][hapmap];0.85[AMR][1000 genomes] |
rs686806 | 0.80[CHB][hapmap];0.85[JPT][hapmap] |
rs7101699 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7102140 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7106065 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7107173 | 0.83[AMR][1000 genomes] |
rs7108632 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7112390 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs7115296 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7122969 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7127931 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7131186 | 0.86[AMR][1000 genomes] |
rs7927069 | 0.82[EUR][1000 genomes] |
rs7931852 | 0.86[AMR][1000 genomes] |
rs7932042 | 0.86[AMR][1000 genomes] |
rs7932525 | 0.89[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs7932991 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs7935653 | 0.81[AMR][1000 genomes] |
rs7936346 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7938897 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7945258 | 0.87[AMR][1000 genomes] |
rs7945936 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7946110 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7946787 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs90623 | 0.85[AMR][1000 genomes] |
rs962380 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv531938 | chr11:106760733-107156814 | Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv898364 | chr11:106944975-107285636 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv898365 | chr11:106944975-107430300 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv898366 | chr11:106944975-107433835 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv898367 | chr11:106944975-107443420 | Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv898369 | chr11:106958304-107443420 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | nsv832260 | chr11:106975094-107181795 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv556279 | chr11:107006900-107186896 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1035911 | chr11:107020991-107198181 | Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
10 | nsv898370 | chr11:107027991-107430300 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
11 | nsv1040190 | chr11:107045534-107175661 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
12 | nsv898371 | chr11:107049968-107130964 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
13 | nsv898372 | chr11:107049968-107433835 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
14 | esv2760577 | chr11:107112270-107128014 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
15 | nsv1045881 | chr11:107113815-107128014 | Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
16 | nsv1038368 | chr11:107116577-107664181 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
17 | nsv541163 | chr11:107116577-107664181 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
18 | nsv523141 | chr11:107124903-107128014 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
19 | nsv898373 | chr11:107124903-107433835 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:107123400-107126200 | Enhancers | K562 | blood |
2 | chr11:107123800-107125800 | Enhancers | HepG2 | liver |
3 | chr11:107125400-107125800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
4 | chr11:107125400-107126000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
5 | chr11:107125400-107126200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
6 | chr11:107125400-107126200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
7 | chr11:107125400-107126200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
8 | chr11:107125400-107126200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |