Variant report

Variant	rs1474196
Chromosome Location	chr3:46659530-46659531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46658701..46661042-chr3:46905477..46908148,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1474195	0.80[AFR][1000 genomes]
rs3930202	1.00[AMR][1000 genomes]
rs4519738	1.00[AMR][1000 genomes]
rs4683261	1.00[AMR][1000 genomes]
rs4683263	0.83[AMR][1000 genomes]
rs4683265	1.00[AMR][1000 genomes]
rs6442014	0.83[AMR][1000 genomes]
rs6442015	1.00[AMR][1000 genomes]
rs6797188	1.00[AMR][1000 genomes]
rs7372128	1.00[AMR][1000 genomes]
rs7631382	0.83[AMR][1000 genomes]
rs7650245	1.00[AMR][1000 genomes]
rs939409	1.00[AMR][1000 genomes]
rs939410	1.00[AMR][1000 genomes]
rs939411	1.00[AMR][1000 genomes]
rs939412	1.00[AMR][1000 genomes]
rs939413	1.00[AMR][1000 genomes]
rs939415	1.00[AMR][1000 genomes]
rs939417	1.00[AMR][1000 genomes]
rs939420	1.00[AMR][1000 genomes]
rs9832679	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876738	chr3:46639048-46680063	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv876739	chr3:46656980-46744966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv876740	chr3:46656980-46748453	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46651600-46671200	Weak transcription	Right Atrium	heart
2	chr3:46652000-46661000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:46652000-46661200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:46654400-46663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:46658800-46661200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:46659200-46659800	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr3:46659400-46659600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:46659400-46659600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:46659400-46659800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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