Variant report

Variant	rs7631382
Chromosome Location	chr3:46688342-46688343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:46688234-46688539	MCF10A-Er-Src	breast:	n/a	chr3:46688385-46688395 chr3:46688386-46688394 chr3:46688384-46688395 chr3:46688385-46688395
2	MAX	chr3:46688272-46688660	SK-N-SH	brain:	n/a	n/a
3	MAX	chr3:46688214-46688636	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr3:46688037-46688611	SK-N-SH	brain:	n/a	n/a
5	FOS	chr3:46688307-46688507	MCF10A-Er-Src	breast:	n/a	chr3:46688385-46688395 chr3:46688386-46688394 chr3:46688384-46688395 chr3:46688385-46688395
6	TCF12	chr3:46688137-46688764	SK-N-SH	brain:	n/a	n/a
7	STAT3	chr3:46688261-46688462	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr3:46688255-46688558	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr3:46688311-46688462	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr3:46688254-46688507	MCF10A-Er-Src	breast:	n/a	chr3:46688385-46688395 chr3:46688386-46688394 chr3:46688384-46688395 chr3:46688385-46688395
11	FOS	chr3:46688233-46688519	MCF10A-Er-Src	breast:	n/a	chr3:46688385-46688395 chr3:46688386-46688394 chr3:46688384-46688395 chr3:46688385-46688395
12	STAT3	chr3:46688305-46688596	MCF10A-Er-Src	breast:	n/a	n/a
13	MYC	chr3:46688263-46688542	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000251967	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1474196	0.83[AMR][1000 genomes]
rs2385859	0.92[AFR][1000 genomes]
rs3930202	0.83[AMR][1000 genomes]
rs4519738	0.83[AMR][1000 genomes]
rs4683258	0.89[AFR][1000 genomes]
rs4683261	0.83[AMR][1000 genomes]
rs4683265	0.83[AMR][1000 genomes]
rs6442015	0.83[AMR][1000 genomes]
rs6797188	0.94[YRI][hapmap];0.83[AMR][1000 genomes]
rs7372128	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7642146	0.90[AFR][1000 genomes]
rs7650245	0.83[AMR][1000 genomes]
rs939409	0.83[AMR][1000 genomes]
rs939410	0.83[AMR][1000 genomes]
rs939411	0.83[AMR][1000 genomes]
rs939412	0.83[AMR][1000 genomes]
rs939413	0.83[AMR][1000 genomes]
rs939415	0.83[AMR][1000 genomes]
rs939417	0.83[AMR][1000 genomes]
rs939420	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv876739	chr3:46656980-46744966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv876740	chr3:46656980-46748453	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv876741	chr3:46663372-46763839	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv516623	chr3:46680063-46852679	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46687800-46688800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:46687800-46688800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:46687800-46688800	Enhancers	NHLF	lung
4	chr3:46687800-46689200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:46687800-46689200	Enhancers	NHDF-Ad	bronchial
6	chr3:46688000-46688400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:46688000-46688400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:46688000-46688800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:46688000-46688800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:46688000-46688800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:46688000-46688800	Enhancers	Left Ventricle	heart
12	chr3:46688000-46688800	Enhancers	HMEC	breast
13	chr3:46688200-46688600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:46688200-46688600	Enhancers	HSMM	muscle
15	chr3:46688200-46688800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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