Variant report

Variant	rs1474231
Chromosome Location	chr3:118627138-118627139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11927719	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs12489856	0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs1879552	0.81[AFR][1000 genomes]
rs2110369	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs2192365	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs55758895	0.85[EUR][1000 genomes]
rs58521606	0.85[EUR][1000 genomes]
rs66601488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802658	0.83[CHB][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs73185803	0.84[AFR][1000 genomes]
rs7610212	0.93[YRI][hapmap]
rs7617443	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7635851	0.87[EUR][1000 genomes]
rs7651619	0.85[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:118620200-118627200	Weak transcription	Fetal Brain Female	brain
3	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
4	chr3:118621800-118630200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:118622000-118644600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:118623000-118628800	Weak transcription	Brain Angular Gyrus	brain
7	chr3:118623400-118627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:118623400-118627400	Weak transcription	Brain Substantia Nigra	brain
9	chr3:118623400-118628400	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:118623400-118628400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:118623400-118628800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:118623400-118629200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:118624000-118631200	Weak transcription	Brain Anterior Caudate	brain
14	chr3:118625200-118627800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:118625400-118631200	Weak transcription	Ovary	ovary
16	chr3:118625400-118639800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:118626200-118627800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:118626200-118627800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr3:118626400-118627600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:118626400-118627800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:118626400-118628000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:118626600-118627600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:118626600-118627600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:118626800-118627600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:118627000-118627600	Weak transcription	A549	lung
26	chr3:118627000-118628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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