Variant report

Variant	rs58521606
Chromosome Location	chr3:118655332-118655333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1474231	0.85[EUR][1000 genomes]
rs2110368	0.84[AFR][1000 genomes]
rs2192365	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052974	0.85[AFR][1000 genomes]
rs55758895	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56760652	0.85[EUR][1000 genomes]
rs66601488	0.85[EUR][1000 genomes]
rs6795936	0.83[AFR][1000 genomes]
rs73185814	0.82[ASN][1000 genomes]
rs7617443	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635851	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651619	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
2	chr3:118645200-118661600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:118645800-118661600	Weak transcription	Left Ventricle	heart
4	chr3:118647600-118661000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:118649200-118655600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:118651800-118661200	Weak transcription	Right Atrium	heart
7	chr3:118652200-118655400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:118652200-118655400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:118652600-118655400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:118652600-118655400	Weak transcription	Brain Substantia Nigra	brain
11	chr3:118652800-118655600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:118652800-118655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:118653000-118660600	Weak transcription	Brain Angular Gyrus	brain
14	chr3:118653200-118655600	Weak transcription	K562	blood
15	chr3:118653800-118655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:118653800-118655400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:118653800-118661200	Weak transcription	Psoas Muscle	Psoas
18	chr3:118654000-118655600	Weak transcription	Brain Anterior Caudate	brain
19	chr3:118655000-118655800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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