Variant report

Variant	rs1474311
Chromosome Location	chr9:14935799-14935800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2140325	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28842341	0.86[EUR][1000 genomes]
rs55789229	0.86[EUR][1000 genomes]
rs55831634	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55834240	0.86[EUR][1000 genomes]
rs59331691	0.86[EUR][1000 genomes]
rs60266351	0.94[ASN][1000 genomes]
rs61521834	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67150794	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7028869	0.86[EUR][1000 genomes]
rs72715609	0.86[EUR][1000 genomes]
rs72715615	0.86[EUR][1000 genomes]
rs72715622	0.86[EUR][1000 genomes]
rs72715624	0.86[EUR][1000 genomes]
rs72715625	0.86[EUR][1000 genomes]
rs72715629	0.86[EUR][1000 genomes]
rs7849466	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14925200-14945400	Weak transcription	Aorta	Aorta
2	chr9:14927600-14937000	Weak transcription	Fetal Lung	lung
3	chr9:14933000-14941800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:14933200-14957200	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:14934600-14935800	Enhancers	Fetal Brain Male	brain
6	chr9:14934600-14937400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:14934600-14938200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:14935000-14937600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:14935200-14936000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr9:14935200-14937000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:14935200-14937200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:14935200-14937200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:14935200-14937200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:14935200-14937400	Enhancers	Colon Smooth Muscle	Colon
15	chr9:14935200-14937600	Enhancers	Fetal Stomach	stomach
16	chr9:14935200-14939200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:14935400-14935800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:14935400-14935800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:14935400-14936600	Enhancers	Fetal Kidney	kidney
20	chr9:14935400-14937400	Enhancers	Fetal Brain Female	brain
21	chr9:14935600-14936600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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