Variant report

Variant	rs55789229
Chromosome Location	chr9:14949661-14949662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1474311	0.86[EUR][1000 genomes]
rs2140325	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28842341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55818920	0.83[ASN][1000 genomes]
rs55831634	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55834240	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56036616	0.83[ASN][1000 genomes]
rs56195535	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59331691	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60266351	0.83[AMR][1000 genomes]
rs60820471	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60838705	0.83[ASN][1000 genomes]
rs61447244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61521834	0.86[EUR][1000 genomes]
rs67086694	0.83[ASN][1000 genomes]
rs67150794	0.86[EUR][1000 genomes]
rs68177350	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7028869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042441	0.83[ASN][1000 genomes]
rs72715609	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715615	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72715622	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72715624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72715625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72715629	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715631	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72715633	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72715639	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72715642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72715648	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72715660	0.90[AMR][1000 genomes]
rs7849466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851933	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14933200-14957200	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:14942000-14950200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:14947600-14951600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:14949400-14950000	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr9:14949600-14949800	Flanking Bivalent TSS/Enh	HepG2	liver
6	chr9:14949600-14950400	ZNF genes & repeats	Fetal Stomach	stomach

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