Variant report

Variant	rs60820471
Chromosome Location	chr9:15007889-15007890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs28842341	0.81[ASN][1000 genomes]
rs55789229	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55818920	0.93[ASN][1000 genomes]
rs55831634	0.81[AMR][1000 genomes]
rs55834240	0.83[ASN][1000 genomes]
rs56036616	0.93[ASN][1000 genomes]
rs56195535	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59331691	0.81[AMR][1000 genomes]
rs60688263	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60838705	0.93[ASN][1000 genomes]
rs61447244	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67086694	0.93[ASN][1000 genomes]
rs68177350	0.88[ASN][1000 genomes]
rs7028869	0.81[ASN][1000 genomes]
rs7042441	0.93[ASN][1000 genomes]
rs72715609	0.81[ASN][1000 genomes]
rs72715615	0.83[ASN][1000 genomes]
rs72715622	0.83[ASN][1000 genomes]
rs72715624	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72715625	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72715629	0.81[ASN][1000 genomes]
rs72715631	0.88[ASN][1000 genomes]
rs72715633	0.88[ASN][1000 genomes]
rs72715639	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72715642	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72715648	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7849466	0.81[ASN][1000 genomes]
rs7851933	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761503	chr9:14960217-15049343	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892622	chr9:14960217-15055607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14994400-15020000	Weak transcription	Brain Angular Gyrus	brain
2	chr9:14994600-15011200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:14994800-15020000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:15003200-15020000	Weak transcription	Brain Anterior Caudate	brain
5	chr9:15005400-15010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:15007800-15008200	Enhancers	Fetal Thymus	thymus

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