Variant report

Variant	rs1474359
Chromosome Location	chr2:190933006-190933007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10804031	0.91[CEU][hapmap]
rs13034973	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13420500	0.91[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1967606	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762546	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3791783	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4853626	0.91[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6761221	0.83[GIH][hapmap]
rs7570532	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7571669	0.91[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1474359	ORMDL1	cis	Lymphoblastoid	GTEx
rs1474359	ASNSD1	cis	parietal	SCAN
rs1474359	ORMDL1	cis	cerebellum	SCAN
rs1474359	ASNSD1	cis	cerebellum	SCAN
rs1474359	PMS1	Cis_1M	lymphoblastoid	RTeQTL
rs1474359	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL
rs1474359	PMS1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190927600-190934800	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:190928400-190934600	Weak transcription	HSMM	muscle
3	chr2:190929200-190934600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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