Variant report
| Variant | rs10804031 |
|---|---|
| Chromosome Location | chr2:190936588-190936589 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138381 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs13401889 | 0.89[EUR][1000 genomes] |
| rs13420500 | 1.00[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs1474359 | 0.91[CEU][hapmap] |
| rs3762546 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs3791783 | 0.90[EUR][1000 genomes] |
| rs4853626 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs57566211 | 0.94[ASN][1000 genomes] |
| rs72909328 | 0.89[ASN][1000 genomes] |
| rs72909330 | 0.89[ASN][1000 genomes] |
| rs7570532 | 0.89[EUR][1000 genomes] |
| rs7571669 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3439178 | chr2:190877215-191124499 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10804031 | ORMDL1 | cis | multi-tissue | Pritchard |
Chromatin state (count:0 , 50 per page) page:
| No data |
