Variant report

Variant	rs57566211
Chromosome Location	chr2:190934675-190934676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10804031	0.94[ASN][1000 genomes]
rs11681628	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13420500	0.80[EUR][1000 genomes]
rs3762546	0.80[EUR][1000 genomes]
rs4853626	0.80[EUR][1000 genomes]
rs72909328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72909330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7571669	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs57566211	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL
rs57566211	PMS1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190927600-190934800	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:190934600-190935000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:190934600-190935000	Enhancers	Adipose Nuclei	Adipose
4	chr2:190934600-190935000	Enhancers	HSMM	muscle
5	chr2:190934600-190935800	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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