Variant report

Variant	rs1474615
Chromosome Location	chr6:145599707-145599708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1321529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1407066	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs551096	0.98[ASN][1000 genomes]
rs575190	0.95[ASN][1000 genomes]
rs62440188	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570676	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7775267	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9376913	0.86[AFR][1000 genomes]
rs9403680	0.81[EUR][1000 genomes]
rs9497230	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145595600-145600200	Enhancers	HepG2	liver
2	chr6:145598400-145603600	Weak transcription	Stomach Mucosa	stomach
3	chr6:145598600-145599800	Enhancers	Fetal Heart	heart
4	chr6:145598800-145600000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:145599000-145601400	Enhancers	Fetal Brain Male	brain
6	chr6:145599200-145600000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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