Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1016589	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1474733	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1474734	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1540912	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1540913	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2092466	0.81[AMR][1000 genomes]
rs2092467	0.81[AMR][1000 genomes]
rs2143508	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6036746	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6036747	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6036748	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6036749	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6036751	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6036753	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049614	0.81[AMR][1000 genomes]
rs6049621	0.81[AMR][1000 genomes]
rs6049622	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049623	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6049624	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049631	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6083506	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6114672	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73610793	0.82[ASN][1000 genomes]
rs8114315	0.82[ASN][1000 genomes]
rs8121098	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24343800-24346000	Enhancers	Dnd41	blood
2	chr20:24344600-24346000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:24344800-24345200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:24344800-24345800	Enhancers	Pancreatic Islets	Pancreatic Islet

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