Variant report

Variant	rs6036753
Chromosome Location	chr20:24357622-24357623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1016589	0.82[AMR][1000 genomes]
rs1474733	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1474734	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1474735	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1540912	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1540913	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2143508	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6036746	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6036747	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6036748	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6036749	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6036751	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6049622	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049623	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6049624	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049631	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6083506	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6114672	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73610794	0.81[ASN][1000 genomes]
rs73610795	0.81[ASN][1000 genomes]
rs73610797	0.81[ASN][1000 genomes]
rs73610798	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24349200-24360000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:24354000-24359400	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:24354800-24359400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr20:24356800-24357800	Enhancers	Primary hematopoietic stem cells	blood
5	chr20:24356800-24357800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:24356800-24358000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr20:24356800-24358000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:24356800-24358000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:24356800-24360000	Weak transcription	Fetal Heart	heart
10	chr20:24357000-24358000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:24357000-24358000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:24357200-24357800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:24357200-24357800	Enhancers	Rectal Smooth Muscle	rectum
14	chr20:24357200-24357800	Enhancers	Stomach Smooth Muscle	stomach
15	chr20:24357200-24358000	Enhancers	NH-A	brain
16	chr20:24357400-24357800	Enhancers	Colon Smooth Muscle	Colon
17	chr20:24357400-24360000	Weak transcription	Fetal Stomach	stomach
18	chr20:24357400-24360000	Weak transcription	NHLF	lung
19	chr20:24357600-24357800	Enhancers	Fetal Lung	lung
20	chr20:24357600-24360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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