Variant report

Variant	rs147790623
Chromosome Location	chr6:36934386-36934387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36933241..36935002-chr6:36938613..36940205,2	MCF-7	breast:
3	chr6:36856253..36859191-chr6:36932885..36935045,2	K562	blood:
4	chr6:36921333..36923898-chr6:36932868..36934927,2	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv525288	chr6:36934244-36937647	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36928200-36935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:36928600-36935000	Weak transcription	HSMMtube	muscle
3	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
4	chr6:36928800-36935000	Weak transcription	HUVEC	blood vessel
5	chr6:36929000-36934400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:36929000-36934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:36929000-36935200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:36929000-36935400	Weak transcription	Ovary	ovary
9	chr6:36929000-36935400	Weak transcription	A549	lung
10	chr6:36929200-36934600	Weak transcription	NH-A	brain
11	chr6:36929400-36934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:36929400-36935200	Weak transcription	K562	blood
13	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
14	chr6:36931400-36935000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:36931400-36935000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:36931400-36935000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:36931400-36935600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:36931600-36934800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:36931600-36935000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:36931600-36935200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:36931600-36935200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:36931600-36935200	Weak transcription	HMEC	breast
23	chr6:36931600-36935400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:36931600-36935400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:36931600-36936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:36931600-36938600	Weak transcription	Fetal Brain Male	brain
27	chr6:36931800-36934400	Weak transcription	Colonic Mucosa	Colon
28	chr6:36931800-36934400	Weak transcription	Fetal Intestine Large	intestine
29	chr6:36931800-36934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:36931800-36934800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:36931800-36935000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:36931800-36935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:36931800-36948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:36932000-36934400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:36932000-36934400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:36932000-36934600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:36932000-36935000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr6:36932000-36935200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:36932200-36934400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:36932200-36934600	Weak transcription	Placenta	Placenta
41	chr6:36932200-36934800	Weak transcription	Brain Angular Gyrus	brain
42	chr6:36932200-36934800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:36932200-36935000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:36932200-36935000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:36932200-36935400	Weak transcription	GM12878-XiMat	blood
46	chr6:36932400-36934400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:36932400-36934400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:36932400-36934400	Weak transcription	NHEK	skin
49	chr6:36932400-36946800	Strong transcription	Fetal Brain Female	brain
50	chr6:36932400-36951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links