Variant report

Variant	rs147808057
Chromosome Location	chr11:5410453-5410454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:5410452-5410502	GM12892	blood:	n/a
2	chr11:5410452-5410502	BJ	skin:	n/a
3	chr11:5410452-5410502	IMR90	lung:	fetal
4	chr11:5410452-5410502	HPAEpiC	pulmonary alveolar:	n/a
5	chr11:5410452-5410502	NHBE	bronchial:	n/a
6	chr11:5410452-5410502	AG09309	skin:	n/a
7	chr11:5410452-5410502	Caco-2	colon:	n/a
8	chr11:5410452-5410502	HUVEC	blood vessel:	n/a
9	chr11:5410452-5410502	HL-60	blood:	n/a
10	chr11:5410452-5410502	HEEpiC	esophagus:	n/a
11	chr11:5410452-5410502	PrEC	prostate:	n/a
12	chr11:5410452-5410502	HRPEpiC	eye:	n/a
13	chr11:5410452-5410502	BE2_C	brain:	n/a
14	chr11:5410452-5410502	AG04449	skin:	fetal
15	chr11:5410452-5410502	ProgFib	skin:	n/a
16	chr11:5410452-5410502	GM06990	blood:	n/a
17	chr11:5410452-5410502	SKMC	muscle:	n/a
18	chr11:5410452-5410502	NT2-D1	testis:	n/a
19	chr11:5410452-5410502	HRE	kidney:	n/a
20	chr11:5410452-5410502	HCT-116	colon:	n/a
21	chr11:5410452-5410502	HIPEpiC	eye:	n/a
22	chr11:5410452-5410502	SK-N-MC	brain:	n/a
23	chr11:5410452-5410502	AG09319	gingival:	n/a
24	chr11:5410452-5410502	GM12891	blood:	n/a
25	chr11:5410452-5410502	SAEC	small airway:	n/a
26	chr11:5410452-5410502	RPTEC	kidney:	n/a
27	chr11:5410452-5410502	MCF-7	breast:	n/a
28	chr11:5410452-5410502	A549	lung:	n/a
29	chr11:5410452-5410502	SK-N-SH_RA	brain:	n/a
30	chr11:5410452-5410502	Jurkat	blood:	n/a
31	chr11:5410452-5410502	AG10803	skin:	n/a
32	chr11:5410452-5410502	HAEpiC	amniotic membrane:	n/a
33	chr11:5410452-5410502	HCF	heart:	n/a
34	chr11:5410452-5410502	AoSMC	blood vessel:	n/a
35	chr11:5410452-5410502	SK-N-SH	brain:	n/a
36	chr11:5410452-5410502	HEK293	kidney:	embryo
37	chr11:5410452-5410502	U87	brain:	n/a
38	chr11:5410452-5410502	K562	blood:	n/a
39	chr11:5410452-5410502	T-47D	breast:	n/a
40	chr11:5410452-5410502	MCF10A-Er-Src	breast:	n/a
41	chr11:5410452-5410502	HMEC	breast:	n/a
42	chr11:5410452-5410502	NHDF-neo	bronchial:	n/a
43	chr11:5410452-5410502	PANC-1	pancreas:	n/a
44	chr11:5410452-5410502	GM19239	blood:	n/a
45	chr11:5410452-5410502	CMK	blood:	n/a
46	chr11:5410452-5410502	ovcar-3	ovarian:	n/a
47	chr11:5410452-5410502	Hela-S3	cervix:	n/a
48	chr11:5410452-5410502	AG04450	lung:	fetal
49	chr11:5410452-5410502	ECC-1	luminal epithelium:	n/a
50	chr11:5410452-5410502	NH-A	brain:	n/a

No data

Variant related genes	Relation type
OR51M1	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv832057	chr11:5375585-5576200	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv896932	chr11:5392484-5424170	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
7	nsv1044243	chr11:5401036-5432316	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	nsv896933	chr11:5402315-5440620	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
9	esv2761646	chr11:5406123-5454241	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
10	esv18235	chr11:5409794-5412609	Enhancers Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	esv1846298	chr11:5410103-5431986	Enhancers Strong transcription Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5408800-5410600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:5409200-5410600	Weak transcription	K562	blood
3	chr11:5409600-5412200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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