Variant report

Variant	rs1479348
Chromosome Location	chr5:114142114-114142115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10054099	0.90[EUR][1000 genomes]
rs10068274	0.85[EUR][1000 genomes]
rs10077812	0.92[EUR][1000 genomes]
rs10085128	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12518615	0.87[EUR][1000 genomes]
rs13356109	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1479343	0.93[EUR][1000 genomes]
rs2416395	0.89[EUR][1000 genomes]
rs4705685	0.91[EUR][1000 genomes]
rs4705687	0.90[EUR][1000 genomes]
rs55726828	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55886343	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56381271	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66578808	0.88[EUR][1000 genomes]
rs6874834	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6894080	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6894747	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs890748	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv599435	chr5:113957246-114166068	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018819	chr5:114036386-114175065	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv599446	chr5:114041080-114166068	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1032132	chr5:114041518-114175142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv599447	chr5:114117381-114143429	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114141600-114142200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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