Variant report
| Variant | rs4705687 |
|---|---|
| Chromosome Location | chr5:114209612-114209613 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10035313 | 0.80[ASN][1000 genomes] |
| rs10039613 | 0.95[CEU][hapmap] |
| rs10054099 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10068274 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10077812 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10085128 | 0.81[EUR][1000 genomes] |
| rs10477524 | 0.83[ASN][1000 genomes] |
| rs10478216 | 0.80[ASN][1000 genomes] |
| rs12518615 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13356109 | 0.84[EUR][1000 genomes] |
| rs1453026 | 0.91[EUR][1000 genomes] |
| rs1479343 | 0.83[EUR][1000 genomes] |
| rs1479348 | 0.90[EUR][1000 genomes] |
| rs2416395 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4705685 | 0.91[EUR][1000 genomes] |
| rs55726828 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs55769443 | 0.91[EUR][1000 genomes] |
| rs55886343 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs56381271 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs66578808 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs890748 | 0.81[EUR][1000 genomes] |
| rs9326935 | 0.91[EUR][1000 genomes] |
| rs9326936 | 0.83[ASN][1000 genomes] |
| rs988700 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882729 | chr5:113743628-114497708 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1020798 | chr5:113821828-114392727 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv537867 | chr5:113821828-114392727 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv436463 | chr5:114207265-114217234 | Flanking Bivalent TSS/Enh Enhancers | n/a | n/a | inside rSNPs | n/a |
| 5 | esv2421988 | chr5:114207702-114210878 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| 6 | nsv441962 | chr5:114207702-114210878 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| 7 | esv11275 | chr5:114208438-114211584 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:114209200-114210000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
