Variant report

Variant	rs1481424
Chromosome Location	chr14:85216881-85216882
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10143209	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111298	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1952168	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1952171	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952172	0.89[EUR][1000 genomes]
rs2623133	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765922	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819814	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819818	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819819	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902163	chr14:85165200-85390134	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85214400-85217000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr14:85214800-85217400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:85215600-85217000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:85215600-85217600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:85215600-85217600	Enhancers	HUVEC	blood vessel
6	chr14:85216400-85217000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:85216400-85218000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:85216600-85217000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:85216600-85217000	Enhancers	NH-A	brain
10	chr14:85216600-85217200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:85216600-85217200	Enhancers	Fetal Kidney	kidney
12	chr14:85216600-85217200	Enhancers	Fetal Lung	lung
13	chr14:85216600-85217200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr14:85216600-85217800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:85216800-85217000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:85216800-85217200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:85216800-85217200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:85216800-85217800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:85216800-85217800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr14:85216800-85217800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr14:85216800-85217800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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