Variant report

Variant	rs1952171
Chromosome Location	chr14:85217777-85217778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10143209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110774	0.80[AFR][1000 genomes]
rs1111298	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1481424	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952172	0.97[EUR][1000 genomes]
rs2623133	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765922	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819814	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819818	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819819	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902163	chr14:85165200-85390134	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85216400-85218000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:85216600-85217800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:85216800-85217800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:85216800-85217800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:85216800-85217800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:85216800-85217800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:85217200-85217800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr14:85217200-85217800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:85217200-85217800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr14:85217200-85218000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:85217200-85218200	Weak transcription	Fetal Kidney	kidney
12	chr14:85217200-85218200	Weak transcription	Fetal Lung	lung
13	chr14:85217400-85217800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr14:85217400-85217800	Active TSS	Pancreas	Pancrea
15	chr14:85217600-85217800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:85217600-85217800	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr14:85217600-85217800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:85217600-85217800	Flanking Active TSS	NH-A	brain
19	chr14:85217600-85217800	Active TSS	NHEK	skin
20	chr14:85217600-85218000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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