Variant report

Variant	rs1481529
Chromosome Location	chr3:99121813-99121814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1031966	0.81[EUR][1000 genomes]
rs1031967	0.81[EUR][1000 genomes]
rs1383847	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1481530	0.81[EUR][1000 genomes]
rs1531732	0.81[ASN][1000 genomes]
rs1580367	0.81[EUR][1000 genomes]
rs1600780	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1812813	0.81[EUR][1000 genomes]
rs1871790	0.81[EUR][1000 genomes]
rs1871794	0.88[EUR][1000 genomes]
rs1997405	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2101108	0.81[EUR][1000 genomes]
rs2128025	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2170385	0.81[EUR][1000 genomes]
rs2170386	0.81[EUR][1000 genomes]
rs2219969	0.81[EUR][1000 genomes]
rs2219975	0.81[ASN][1000 genomes]
rs2245940	0.81[EUR][1000 genomes]
rs2448966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2448969	0.81[EUR][1000 genomes]
rs2464139	0.81[EUR][1000 genomes]
rs2464148	0.81[EUR][1000 genomes]
rs2623318	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2623319	0.81[EUR][1000 genomes]
rs2623320	0.81[EUR][1000 genomes]
rs2623321	0.81[EUR][1000 genomes]
rs2623323	0.81[EUR][1000 genomes]
rs2623324	0.81[EUR][1000 genomes]
rs2623325	0.81[EUR][1000 genomes]
rs2623326	0.81[EUR][1000 genomes]
rs2623327	0.81[EUR][1000 genomes]
rs2623328	0.81[EUR][1000 genomes]
rs2623329	0.81[EUR][1000 genomes]
rs2623330	0.81[EUR][1000 genomes]
rs2623331	0.81[EUR][1000 genomes]
rs2623332	0.81[EUR][1000 genomes]
rs2623336	0.81[EUR][1000 genomes]
rs2623338	0.81[EUR][1000 genomes]
rs2623339	0.81[EUR][1000 genomes]
rs2623340	0.81[EUR][1000 genomes]
rs2623342	0.81[EUR][1000 genomes]
rs2623347	0.81[EUR][1000 genomes]
rs2623348	0.81[EUR][1000 genomes]
rs2623349	0.81[EUR][1000 genomes]
rs2623350	0.81[EUR][1000 genomes]
rs2623351	0.81[EUR][1000 genomes]
rs2623354	0.81[EUR][1000 genomes]
rs2623355	0.81[EUR][1000 genomes]
rs2623356	0.81[EUR][1000 genomes]
rs2623376	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2700586	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2700587	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2700590	0.81[EUR][1000 genomes]
rs2700592	0.81[EUR][1000 genomes]
rs2700593	0.81[EUR][1000 genomes]
rs2700594	0.81[EUR][1000 genomes]
rs2700595	0.81[EUR][1000 genomes]
rs2700599	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2700606	0.81[EUR][1000 genomes]
rs2700608	0.81[EUR][1000 genomes]
rs2700609	0.81[EUR][1000 genomes]
rs2700610	0.81[EUR][1000 genomes]
rs2700615	0.81[EUR][1000 genomes]
rs2700623	0.81[EUR][1000 genomes]
rs2700624	0.81[EUR][1000 genomes]
rs2700626	0.81[ASN][1000 genomes]
rs2700635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700636	0.81[EUR][1000 genomes]
rs2700637	0.81[EUR][1000 genomes]
rs2700641	0.81[EUR][1000 genomes]
rs2700642	0.81[EUR][1000 genomes]
rs2700647	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2700648	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2700667	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2929433	0.81[EUR][1000 genomes]
rs2929434	0.81[EUR][1000 genomes]
rs2929435	0.81[EUR][1000 genomes]
rs2929437	0.81[EUR][1000 genomes]
rs2929440	0.81[EUR][1000 genomes]
rs2929441	0.81[EUR][1000 genomes]
rs2929442	0.81[EUR][1000 genomes]
rs2929443	0.81[ASN][1000 genomes]
rs2951491	0.81[EUR][1000 genomes]
rs2951493	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2960092	0.81[EUR][1000 genomes]
rs4365660	0.81[EUR][1000 genomes]
rs4530567	0.81[EUR][1000 genomes]
rs6807371	0.81[EUR][1000 genomes]
rs7625600	0.81[EUR][1000 genomes]
rs969987	0.81[EUR][1000 genomes]
rs9756004	0.87[EUR][1000 genomes]
rs9758342	0.85[EUR][1000 genomes]
rs9835548	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877216	chr3:99065296-99161022	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99118400-99130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:99118600-99132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links