Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44677585..44679491-chr10:44682542..44684188,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10793526	0.80[ASN][1000 genomes]
rs11238913	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238921	0.81[EUR][1000 genomes]
rs11238945	0.80[ASN][1000 genomes]
rs1482477	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1509930	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1680640	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1704220	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1746040	0.80[ASN][1000 genomes]
rs1746043	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2054620	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2054621	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2505745	0.85[EUR][1000 genomes]
rs2624676	0.96[ASN][1000 genomes]
rs2802484	0.98[ASN][1000 genomes]
rs2802486	0.90[ASN][1000 genomes]
rs2804032	0.85[ASN][1000 genomes]
rs2804034	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2804038	0.98[ASN][1000 genomes]
rs3851257	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6593405	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6593407	0.80[ASN][1000 genomes]
rs7918355	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7921850	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7921861	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1482472	ZNF239	cis	parietal	SCAN
rs1482472	RTN2	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:44680200-44683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:44680400-44687000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:44682600-44683800	Weak transcription	Pancreas	Pancrea
6	chr10:44682600-44687000	Weak transcription	NHDF-Ad	bronchial
7	chr10:44682800-44684200	Weak transcription	HepG2	liver
8	chr10:44682800-44688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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