Variant report

Variant	rs1680640
Chromosome Location	chr10:44702276-44702277
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10793526	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238913	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238921	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11238945	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1482472	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1482477	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1509930	0.84[ASN][1000 genomes]
rs1704219	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1704220	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1746040	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1746043	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054620	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054621	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505745	0.88[ASN][1000 genomes]
rs2505746	0.87[ASN][1000 genomes]
rs2505747	0.85[ASN][1000 genomes]
rs2624676	0.80[ASN][1000 genomes]
rs2802484	0.82[ASN][1000 genomes]
rs2804032	0.95[ASN][1000 genomes]
rs2804034	0.90[ASN][1000 genomes]
rs2804038	0.82[ASN][1000 genomes]
rs3851257	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475926	0.91[CHB][hapmap]
rs4948615	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs584411	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs647419	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs647854	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593405	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6593407	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073818	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7921850	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7921861	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
2	chr10:44700200-44703000	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44700600-44702400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:44700800-44702600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:44701200-44705000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:44701200-44705400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:44701200-44705400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:44701600-44703000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44701800-44702600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr10:44701800-44703000	Enhancers	HepG2	liver
11	chr10:44701800-44704400	Weak transcription	Ovary	ovary
12	chr10:44701800-44704600	Weak transcription	Fetal Heart	heart
13	chr10:44702000-44705200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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