Variant report

Variant	rs475926
Chromosome Location	chr10:44760887-44760888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr10:44760758-44760901	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000237590	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1704219	0.81[ASN][1000 genomes]
rs1746043	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1746046	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1746047	0.85[AFR][1000 genomes]
rs1746048	0.83[AFR][1000 genomes]
rs1746049	0.80[AFR][1000 genomes]
rs1746050	0.80[AFR][1000 genomes]
rs2437934	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2437935	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2476352	0.93[ASN][1000 genomes]
rs2505734	0.84[EUR][1000 genomes]
rs2505745	0.80[ASN][1000 genomes]
rs479596	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs486234	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs487465	0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs492152	0.86[AFR][1000 genomes]
rs518594	0.85[AFR][1000 genomes]
rs522293	0.85[AFR][1000 genomes]
rs573141	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs584411	0.81[ASN][1000 genomes]
rs604674	0.85[AFR][1000 genomes]
rs605445	0.85[AFR][1000 genomes]
rs605956	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs607363	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs617481	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs620356	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs620828	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs631414	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs634963	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs647419	0.82[ASN][1000 genomes]
rs647854	0.83[ASN][1000 genomes]
rs665855	0.88[AFR][1000 genomes]
rs7073818	0.81[ASN][1000 genomes]
rs7921861	0.81[ASN][1000 genomes]
rs88796	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3495951	chr10:44757085-44761391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3496062	chr10:44757120-44761379	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3495840	chr10:44757152-44761335	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3496173	chr10:44757152-44761335	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44756000-44761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:44758400-44762200	Weak transcription	Right Ventricle	heart
3	chr10:44760200-44761000	Enhancers	GM12878-XiMat	blood

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