Variant report

Variant	rs617481
Chromosome Location	chr10:44737144-44737145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44735389..44737534-chr10:44738052..44740916,2	K562	blood:
2	chr10:44729297..44731322-chr10:44735217..44738184,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10793526	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10900007	0.80[ASN][1000 genomes]
rs11238945	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1482477	0.85[AFR][1000 genomes]
rs1704219	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1704220	0.84[AFR][1000 genomes]
rs1746040	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1746043	0.96[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1746046	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2437934	0.86[JPT][hapmap]
rs2437935	0.94[ASN][1000 genomes]
rs2476352	0.99[ASN][1000 genomes]
rs2505745	0.85[ASN][1000 genomes]
rs2505746	0.83[ASN][1000 genomes]
rs2505747	0.82[ASN][1000 genomes]
rs2576355	0.85[AFR][1000 genomes]
rs2760670	0.88[AFR][1000 genomes]
rs3851257	0.82[AFR][1000 genomes]
rs473501	0.88[AFR][1000 genomes]
rs475926	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs486234	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs494207	0.87[AFR][1000 genomes]
rs4948615	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs498810	0.88[AFR][1000 genomes]
rs501120	0.82[AFR][1000 genomes]
rs510785	0.88[AFR][1000 genomes]
rs513391	0.88[AFR][1000 genomes]
rs534079	0.83[AFR][1000 genomes]
rs535176	0.88[AFR][1000 genomes]
rs535949	0.83[AFR][1000 genomes]
rs546659	0.88[AFR][1000 genomes]
rs554565	0.82[AFR][1000 genomes]
rs559469	0.83[AFR][1000 genomes]
rs579058	0.82[AFR][1000 genomes]
rs583489	0.92[AFR][1000 genomes]
rs584411	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs587375	0.87[AFR][1000 genomes]
rs605414	0.85[AFR][1000 genomes]
rs605956	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs607592	0.85[AFR][1000 genomes]
rs607609	0.85[AFR][1000 genomes]
rs617542	0.88[AFR][1000 genomes]
rs622472	0.88[AFR][1000 genomes]
rs622956	0.82[AFR][1000 genomes]
rs631414	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635612	0.88[AFR][1000 genomes]
rs646890	0.88[AFR][1000 genomes]
rs647419	0.87[ASN][1000 genomes]
rs647854	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs649192	0.88[AFR][1000 genomes]
rs6593407	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs670056	0.83[AFR][1000 genomes]
rs671765	0.83[AFR][1000 genomes]
rs683297	0.88[AFR][1000 genomes]
rs684196	0.86[AFR][1000 genomes]
rs684666	0.88[AFR][1000 genomes]
rs687175	0.83[AFR][1000 genomes]
rs7073818	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7921861	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs88796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44729600-44737800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:44735800-44738200	Enhancers	HepG2	liver
4	chr10:44736400-44738400	Enhancers	Pancreas	Pancrea
5	chr10:44737000-44737400	Weak transcription	HSMMtube	muscle

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