Variant report

Variant	rs486234
Chromosome Location	chr10:44744946-44744947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44744429..44746085-chr10:44747966..44749573,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10793526	0.80[ASN][1000 genomes]
rs10900007	0.82[ASN][1000 genomes]
rs11238945	0.80[ASN][1000 genomes]
rs1704219	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1746040	0.80[ASN][1000 genomes]
rs1746043	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1746046	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2437935	0.93[ASN][1000 genomes]
rs2476352	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505745	0.83[ASN][1000 genomes]
rs2505746	0.82[ASN][1000 genomes]
rs2505747	0.80[ASN][1000 genomes]
rs2576355	0.87[AFR][1000 genomes]
rs2760670	0.89[AFR][1000 genomes]
rs2802484	0.80[EUR][1000 genomes]
rs2804038	0.80[EUR][1000 genomes]
rs473501	0.89[AFR][1000 genomes]
rs475926	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs494207	0.88[AFR][1000 genomes]
rs4948615	0.81[ASN][1000 genomes]
rs498810	0.89[AFR][1000 genomes]
rs501120	0.83[AFR][1000 genomes]
rs504799	0.81[AFR][1000 genomes]
rs510785	0.89[AFR][1000 genomes]
rs513391	0.89[AFR][1000 genomes]
rs534079	0.84[AFR][1000 genomes]
rs535176	0.89[AFR][1000 genomes]
rs535949	0.84[AFR][1000 genomes]
rs546659	0.89[AFR][1000 genomes]
rs554565	0.83[AFR][1000 genomes]
rs559469	0.84[AFR][1000 genomes]
rs579058	0.83[AFR][1000 genomes]
rs583489	0.84[AFR][1000 genomes]
rs584411	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs587375	0.88[AFR][1000 genomes]
rs605414	0.91[AFR][1000 genomes]
rs605956	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs607592	0.87[AFR][1000 genomes]
rs607609	0.87[AFR][1000 genomes]
rs617035	0.84[AFR][1000 genomes]
rs617481	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs617542	0.89[AFR][1000 genomes]
rs622472	0.89[AFR][1000 genomes]
rs622956	0.83[AFR][1000 genomes]
rs631414	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs635612	0.89[AFR][1000 genomes]
rs646890	0.89[AFR][1000 genomes]
rs647419	0.85[ASN][1000 genomes]
rs647854	0.86[ASN][1000 genomes]
rs649192	0.89[AFR][1000 genomes]
rs6593407	0.80[ASN][1000 genomes]
rs670056	0.83[AFR][1000 genomes]
rs671765	0.84[AFR][1000 genomes]
rs683297	0.89[AFR][1000 genomes]
rs684196	0.88[AFR][1000 genomes]
rs684666	0.89[AFR][1000 genomes]
rs687175	0.84[AFR][1000 genomes]
rs7073818	0.84[ASN][1000 genomes]
rs7921861	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs88796	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs915083	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44738000-44745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44740400-44745000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:44741000-44745000	Weak transcription	Placenta	Placenta
4	chr10:44744800-44745000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:44744800-44745200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:44744800-44745200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:44744800-44745400	Enhancers	HepG2	liver
8	chr10:44744800-44745800	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links