Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1704219	0.82[ASN][1000 genomes]
rs1746043	0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1746046	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2437934	0.80[CEU][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2476352	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505734	0.80[CEU][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2505745	0.95[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2505746	0.81[ASN][1000 genomes]
rs475926	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs486234	0.93[ASN][1000 genomes]
rs584411	0.82[ASN][1000 genomes]
rs605956	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs617481	0.94[ASN][1000 genomes]
rs631414	0.94[ASN][1000 genomes]
rs647419	0.83[ASN][1000 genomes]
rs647854	0.84[ASN][1000 genomes]
rs7073818	0.82[ASN][1000 genomes]
rs754713	0.83[MEX][hapmap]
rs7921861	0.82[ASN][1000 genomes]
rs88796	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2437935	ZNF239	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44749000-44757600	Enhancers	HepG2	liver
2	chr10:44749400-44753600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:44749400-44754400	Weak transcription	Placenta	Placenta
4	chr10:44749400-44754600	Weak transcription	Pancreas	Pancrea
5	chr10:44749400-44756200	Weak transcription	Lung	lung
6	chr10:44749600-44753600	Weak transcription	Fetal Intestine Large	intestine
7	chr10:44749600-44756400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:44749800-44756800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:44750000-44754400	Weak transcription	Liver	Liver
10	chr10:44750200-44756000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44752200-44752400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:44752200-44752400	Enhancers	H9 Cell Line	embryonic stem cell

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