Variant report

Variant	rs605956
Chromosome Location	chr10:44756648-44756649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44669470..44673256-chr10:44752953..44756762,5	MCF-7	breast:
2	chr10:44755013..44756692-chr10:44790155..44792136,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1704219	0.82[ASN][1000 genomes]
rs1746043	0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1746046	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2437934	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2437935	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2476352	0.94[ASN][1000 genomes]
rs2505734	0.84[EUR][1000 genomes]
rs2505745	0.82[ASN][1000 genomes]
rs2505746	0.80[ASN][1000 genomes]
rs475926	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs479596	0.86[YRI][hapmap]
rs486234	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs487465	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs492152	0.87[AFR][1000 genomes]
rs518594	0.92[AFR][1000 genomes]
rs522293	0.92[AFR][1000 genomes]
rs573141	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs584411	0.82[ASN][1000 genomes]
rs604674	0.92[AFR][1000 genomes]
rs605445	0.92[AFR][1000 genomes]
rs607363	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs617481	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs620356	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs620828	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs631414	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs634963	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs647419	0.84[ASN][1000 genomes]
rs647854	0.84[ASN][1000 genomes]
rs665855	0.89[AFR][1000 genomes]
rs7073818	0.82[ASN][1000 genomes]
rs7921861	0.82[ASN][1000 genomes]
rs88796	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44749000-44757600	Enhancers	HepG2	liver
2	chr10:44749800-44756800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:44753000-44757800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44754600-44758400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:44755200-44757000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:44755200-44757800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44755400-44757000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:44755400-44757000	Weak transcription	Pancreas	Pancrea
9	chr10:44755400-44758200	Enhancers	Fetal Heart	heart
10	chr10:44755800-44757800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr10:44755800-44758400	Enhancers	Right Ventricle	heart
12	chr10:44756000-44757400	Bivalent Enhancer	Fetal Stomach	stomach
13	chr10:44756000-44758400	Enhancers	Spleen	Spleen
14	chr10:44756000-44759200	Enhancers	NHDF-Ad	bronchial
15	chr10:44756000-44761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:44756200-44757800	Enhancers	Placenta	Placenta
17	chr10:44756200-44757800	Enhancers	Left Ventricle	heart
18	chr10:44756200-44760800	Enhancers	Rectal Smooth Muscle	rectum
19	chr10:44756400-44757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:44756400-44757000	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:44756400-44757200	Weak transcription	Lung	lung
22	chr10:44756400-44757800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:44756400-44758000	Enhancers	Fetal Muscle Leg	muscle
24	chr10:44756400-44760200	Enhancers	Colon Smooth Muscle	Colon
25	chr10:44756600-44756800	Flanking Active TSS	GM12878-XiMat	blood
26	chr10:44756600-44757200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:44756600-44757600	Enhancers	Esophagus	oesophagus
28	chr10:44756600-44757800	Enhancers	Colonic Mucosa	Colon
29	chr10:44756600-44758000	Enhancers	Right Atrium	heart
30	chr10:44756600-44758200	Enhancers	Ovary	ovary
31	chr10:44756600-44759200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:44756600-44760200	Enhancers	Adipose Nuclei	Adipose

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