Variant report

Variant	rs2437934
Chromosome Location	chr10:44803925-44803926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:
2	chr10:44795472..44799365-chr10:44803832..44806502,4	MCF-7	breast:
3	chr10:44803131..44805598-chr10:44807821..44810324,2	MCF-7	breast:
4	chr10:44799569..44801193-chr10:44803060..44804817,2	K562	blood:
5	chr10:44803835..44808039-chr10:44810425..44813828,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1089042	0.82[AMR][1000 genomes]
rs1746046	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2437935	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2476352	0.80[ASN][1000 genomes]
rs2505734	1.00[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs475926	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs605956	0.80[ASN][1000 genomes]
rs754713	0.87[CHD][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44797400-44806000	Weak transcription	Fetal Heart	heart
3	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44797800-44806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
7	chr10:44798000-44806000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:44799800-44806000	Weak transcription	Right Ventricle	heart
9	chr10:44801800-44804600	Enhancers	GM12878-XiMat	blood
10	chr10:44802200-44806200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:44802200-44806400	Weak transcription	HSMM	muscle
12	chr10:44802400-44806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:44802400-44806200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:44802400-44806200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:44802400-44806200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:44802400-44806200	Weak transcription	Psoas Muscle	Psoas
17	chr10:44802400-44806200	Weak transcription	Right Atrium	heart
18	chr10:44802400-44806200	Weak transcription	NHDF-Ad	bronchial
19	chr10:44802400-44806200	Weak transcription	Osteobl	bone
20	chr10:44802400-44806400	Weak transcription	NHLF	lung
21	chr10:44802400-44806600	Weak transcription	NH-A	brain
22	chr10:44802600-44806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:44802600-44806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:44802600-44806400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:44803200-44805800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:44803600-44806200	Enhancers	Fetal Stomach	stomach
27	chr10:44803800-44804000	Enhancers	Aorta	Aorta
28	chr10:44803800-44805400	Enhancers	Fetal Lung	lung
29	chr10:44803800-44805800	Weak transcription	Brain Germinal Matrix	brain

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