Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44790586..44792742-chr10:44798450..44801246,2	K562	blood:

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11238978	0.85[ASN][1000 genomes]
rs1657342	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1746054	0.91[EUR][1000 genomes]
rs2437934	0.82[AMR][1000 genomes]
rs2505734	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs754713	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800317	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800321	0.95[EUR][1000 genomes]
rs800322	0.94[EUR][1000 genomes]
rs800323	0.95[EUR][1000 genomes]
rs800325	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs800326	0.95[EUR][1000 genomes]
rs800328	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs809602	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811649	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44797000-44799400	Weak transcription	Right Ventricle	heart
3	chr10:44797000-44801400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44797000-44801600	Weak transcription	Psoas Muscle	Psoas
5	chr10:44797400-44801400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:44797400-44801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44797400-44801600	Weak transcription	Aorta	Aorta
8	chr10:44797400-44802000	Weak transcription	A549	lung
9	chr10:44797400-44806000	Weak transcription	Fetal Heart	heart
10	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:44797600-44799400	Weak transcription	NHDF-Ad	bronchial
13	chr10:44797600-44801400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:44797600-44801600	Weak transcription	NHLF	lung
15	chr10:44797800-44801400	Weak transcription	Osteobl	bone
16	chr10:44797800-44806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
18	chr10:44798000-44801600	Weak transcription	NH-A	brain
19	chr10:44798000-44806000	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:44799200-44801600	Weak transcription	Right Atrium	heart

Quick Search: