Variant report

Variant	rs800326
Chromosome Location	chr10:44802695-44802696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1089042	0.95[EUR][1000 genomes]
rs11598523	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1436926	0.99[ASN][1000 genomes]
rs1436927	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1657342	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746054	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17659345	0.99[ASN][1000 genomes]
rs55769846	0.80[ASN][1000 genomes]
rs56043323	0.80[ASN][1000 genomes]
rs58173335	0.99[ASN][1000 genomes]
rs58189594	0.80[ASN][1000 genomes]
rs7086461	0.80[ASN][1000 genomes]
rs7099154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs72788791	0.80[ASN][1000 genomes]
rs754713	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs800317	0.93[EUR][1000 genomes]
rs800321	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800325	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800328	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs809602	0.93[EUR][1000 genomes]
rs811649	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44797400-44806000	Weak transcription	Fetal Heart	heart
3	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44797800-44806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
7	chr10:44798000-44806000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:44799800-44806000	Weak transcription	Right Ventricle	heart
9	chr10:44801800-44804600	Enhancers	GM12878-XiMat	blood
10	chr10:44802200-44806200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:44802200-44806400	Weak transcription	HSMM	muscle
12	chr10:44802400-44803800	Weak transcription	Aorta	Aorta
13	chr10:44802400-44806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:44802400-44806200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:44802400-44806200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:44802400-44806200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:44802400-44806200	Weak transcription	Psoas Muscle	Psoas
18	chr10:44802400-44806200	Weak transcription	Right Atrium	heart
19	chr10:44802400-44806200	Weak transcription	NHDF-Ad	bronchial
20	chr10:44802400-44806200	Weak transcription	Osteobl	bone
21	chr10:44802400-44806400	Weak transcription	NHLF	lung
22	chr10:44802400-44806600	Weak transcription	NH-A	brain
23	chr10:44802600-44806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:44802600-44806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:44802600-44806400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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