Variant report

Variant	rs800328
Chromosome Location	chr10:44804901-44804902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44804868..44806553-chr10:44814577..44816220,2	MCF-7	breast:
2	chr10:44667690..44669212-chr10:44804064..44805875,2	MCF-7	breast:
3	chr10:44795472..44799365-chr10:44803832..44806502,4	MCF-7	breast:
4	chr10:44804505..44808299-chr10:44810084..44813443,4	MCF-7	breast:
5	chr10:44803131..44805598-chr10:44807821..44810324,2	MCF-7	breast:
6	chr10:44799839..44801951-chr10:44804606..44806678,2	MCF-7	breast:
7	chr10:44729477..44732943-chr10:44804375..44806757,3	MCF-7	breast:
8	chr10:44802341..44804766-chr10:44804876..44806758,5	MCF-7	breast:
9	chr10:44803835..44808039-chr10:44810425..44813828,4	K562	blood:
10	chr10:44804168..44805892-chr10:44806040..44808207,2	MCF-7	breast:

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1089042	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1436926	0.88[ASN][1000 genomes]
rs1436927	0.88[ASN][1000 genomes]
rs1657342	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1746054	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17659345	0.88[ASN][1000 genomes]
rs58173335	0.88[ASN][1000 genomes]
rs7099154	0.88[ASN][1000 genomes]
rs754713	0.82[EUR][1000 genomes]
rs800317	0.82[EUR][1000 genomes]
rs800321	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs800322	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs800323	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs800325	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs800326	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs809602	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs811649	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44797400-44806000	Weak transcription	Fetal Heart	heart
3	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44797800-44806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
7	chr10:44798000-44806000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:44799800-44806000	Weak transcription	Right Ventricle	heart
9	chr10:44802200-44806200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:44802200-44806400	Weak transcription	HSMM	muscle
11	chr10:44802400-44806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:44802400-44806200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44802400-44806200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:44802400-44806200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:44802400-44806200	Weak transcription	Psoas Muscle	Psoas
16	chr10:44802400-44806200	Weak transcription	Right Atrium	heart
17	chr10:44802400-44806200	Weak transcription	NHDF-Ad	bronchial
18	chr10:44802400-44806200	Weak transcription	Osteobl	bone
19	chr10:44802400-44806400	Weak transcription	NHLF	lung
20	chr10:44802400-44806600	Weak transcription	NH-A	brain
21	chr10:44802600-44806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:44802600-44806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:44802600-44806400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:44803200-44805800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:44803600-44806200	Enhancers	Fetal Stomach	stomach
26	chr10:44803800-44805400	Enhancers	Fetal Lung	lung
27	chr10:44803800-44805800	Weak transcription	Brain Germinal Matrix	brain
28	chr10:44804200-44806200	Enhancers	Fetal Brain Female	brain
29	chr10:44804200-44806200	Enhancers	Rectal Smooth Muscle	rectum
30	chr10:44804400-44806200	Enhancers	Stomach Smooth Muscle	stomach
31	chr10:44804600-44805600	Weak transcription	GM12878-XiMat	blood
32	chr10:44804600-44806200	Enhancers	Colon Smooth Muscle	Colon
33	chr10:44804600-44807000	Enhancers	Fetal Brain Male	brain

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