Variant report

Variant	rs58173335
Chromosome Location	chr10:44795426-44795427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44790196..44793217-chr10:44793221..44795884,3	MCF-7	breast:
2	chr10:44689310..44690941-chr10:44794832..44796447,2	MCF-7	breast:
3	chr10:44753173..44755247-chr10:44795371..44798195,2	MCF-7	breast:
4	chr10:44790481..44792534-chr10:44792786..44795587,2	MCF-7	breast:
5	chr10:44776762..44778812-chr10:44792922..44795604,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11598523	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1436926	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1657342	0.99[ASN][1000 genomes]
rs1746054	0.99[ASN][1000 genomes]
rs17659345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55769846	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56043323	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58189594	0.81[ASN][1000 genomes]
rs7086461	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7099154	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788791	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs800321	0.99[ASN][1000 genomes]
rs800322	0.99[ASN][1000 genomes]
rs800323	0.99[ASN][1000 genomes]
rs800325	0.99[ASN][1000 genomes]
rs800326	0.99[ASN][1000 genomes]
rs800328	0.88[ASN][1000 genomes]
rs811649	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44789200-44796600	Weak transcription	Fetal Brain Female	brain
2	chr10:44790600-44796600	Weak transcription	Aorta	Aorta
3	chr10:44791200-44796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:44791200-44796000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44791200-44796600	Weak transcription	Left Ventricle	heart
6	chr10:44791200-44796800	Weak transcription	Gastric	stomach
7	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44791400-44795600	Weak transcription	NHLF	lung
9	chr10:44791400-44795800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:44791400-44796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44791400-44796000	Weak transcription	GM12878-XiMat	blood
12	chr10:44791400-44796200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:44791400-44796200	Weak transcription	Brain Anterior Caudate	brain
14	chr10:44791400-44796200	Weak transcription	Brain Substantia Nigra	brain
15	chr10:44791400-44796400	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:44791600-44795600	Weak transcription	Osteobl	bone
17	chr10:44791600-44796000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:44791600-44796000	Weak transcription	NH-A	brain
19	chr10:44791600-44796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:44791600-44796200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:44791600-44796800	Weak transcription	Right Ventricle	heart
22	chr10:44792200-44796600	Weak transcription	Brain Angular Gyrus	brain
23	chr10:44792400-44796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:44793800-44796200	Weak transcription	Fetal Heart	heart
25	chr10:44794400-44796600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:44794400-44799000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:44794800-44798000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr10:44795000-44795600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:44795000-44796400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:44795000-44797800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:44795200-44797400	Enhancers	NHEK	skin
32	chr10:44795200-44797800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:44795400-44795600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr10:44795400-44795800	Weak transcription	Brain Germinal Matrix	brain
35	chr10:44795400-44797400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:44795400-44797400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:44795400-44797400	Enhancers	HSMM	muscle
38	chr10:44795400-44797600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:44795400-44797600	Enhancers	NHDF-Ad	bronchial
40	chr10:44795400-44798000	Enhancers	Fetal Muscle Leg	muscle

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