Variant report

Variant	rs7099154
Chromosome Location	chr10:44792750-44792751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44790196..44793217-chr10:44793221..44795884,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11598523	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1436926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1657342	0.99[ASN][1000 genomes]
rs17155986	0.87[YRI][hapmap]
rs1746054	0.99[ASN][1000 genomes]
rs17659345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55769846	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56043323	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58173335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58189594	0.81[ASN][1000 genomes]
rs7086461	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72788791	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs800321	0.99[ASN][1000 genomes]
rs800322	0.99[ASN][1000 genomes]
rs800323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs800325	0.99[ASN][1000 genomes]
rs800326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs800328	0.88[ASN][1000 genomes]
rs811649	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44789200-44796600	Weak transcription	Fetal Brain Female	brain
2	chr10:44790600-44796600	Weak transcription	Aorta	Aorta
3	chr10:44791000-44793200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:44791000-44795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:44791200-44793000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:44791200-44793200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:44791200-44793200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:44791200-44794400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:44791200-44795200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:44791200-44795400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:44791200-44796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:44791200-44796000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:44791200-44796600	Weak transcription	Left Ventricle	heart
14	chr10:44791200-44796800	Weak transcription	Gastric	stomach
15	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:44791400-44792800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:44791400-44794600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:44791400-44795600	Weak transcription	NHLF	lung
19	chr10:44791400-44795800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:44791400-44796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:44791400-44796000	Weak transcription	GM12878-XiMat	blood
22	chr10:44791400-44796200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44791400-44796200	Weak transcription	Brain Anterior Caudate	brain
24	chr10:44791400-44796200	Weak transcription	Brain Substantia Nigra	brain
25	chr10:44791400-44796400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:44791600-44793800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:44791600-44794200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:44791600-44795200	Weak transcription	Brain Germinal Matrix	brain
29	chr10:44791600-44795400	Weak transcription	NHDF-Ad	bronchial
30	chr10:44791600-44795600	Weak transcription	Osteobl	bone
31	chr10:44791600-44796000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:44791600-44796000	Weak transcription	NH-A	brain
33	chr10:44791600-44796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:44791600-44796200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:44791600-44796800	Weak transcription	Right Ventricle	heart
36	chr10:44792200-44796600	Weak transcription	Brain Angular Gyrus	brain
37	chr10:44792400-44794400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr10:44792400-44796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:44792600-44793000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr10:44792600-44793800	Enhancers	HUES6 Cell Line	embryonic stem cell

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