Variant report

Variant	rs7073818
Chromosome Location	chr10:44728797-44728798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10793526	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238913	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11238921	0.88[EUR][1000 genomes]
rs11238945	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1482477	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1680640	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1704219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704220	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1746040	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1746043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054620	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2054621	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2437935	0.82[ASN][1000 genomes]
rs2476352	0.85[ASN][1000 genomes]
rs2505745	0.99[ASN][1000 genomes]
rs2505746	0.98[ASN][1000 genomes]
rs2505747	0.96[ASN][1000 genomes]
rs2804032	0.86[ASN][1000 genomes]
rs2804034	0.83[ASN][1000 genomes]
rs3851257	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475926	0.81[ASN][1000 genomes]
rs486234	0.84[ASN][1000 genomes]
rs4948615	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605956	0.82[ASN][1000 genomes]
rs617481	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs631414	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs647419	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs647854	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593405	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6593407	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7918355	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7921850	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7921861	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs88796	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44723000-44729800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:44727600-44728800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:44727600-44728800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:44727600-44729000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:44728000-44728800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:44728000-44730200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:44728000-44734200	Enhancers	Placenta	Placenta
8	chr10:44728200-44728800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:44728200-44730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:44728200-44731400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:44728400-44729000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:44728400-44730600	Enhancers	Fetal Stomach	stomach
13	chr10:44728400-44734800	Enhancers	HepG2	liver
14	chr10:44728600-44729000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:44728600-44729000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr10:44728600-44729000	Enhancers	K562	blood
17	chr10:44728600-44729200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr10:44728600-44729200	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr10:44728600-44729400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:44728600-44729600	Enhancers	Fetal Muscle Trunk	muscle
21	chr10:44728600-44730000	Enhancers	Fetal Lung	lung
22	chr10:44728600-44730200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:44728600-44730200	Enhancers	Fetal Muscle Leg	muscle
24	chr10:44728600-44730400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:44728600-44731000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:44728600-44731400	Enhancers	Cortex derived primary cultured neurospheres	brain

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