Variant report

Variant	rs148248187
Chromosome Location	chr15:74219277-74219278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr15:74218578-74219345	H1-hESC	embryonic stem cell:	n/a	n/a
2	RCOR1	chr15:74218148-74219871	IMR90	lung:	n/a	n/a
3	MAX	chr15:74218463-74220913	MCF-7	breast:	n/a	n/a
4	ZBTB7A	chr15:74219034-74220559	ECC-1	luminal epithelium:	n/a	chr15:74220350-74220359 chr15:74220286-74220294
5	MYC	chr15:74219261-74219284	MCF-7	breast:	n/a	n/a
6	MAZ	chr15:74216078-74220816	IMR90	lung:	n/a	n/a
7	NFIC	chr15:74218412-74220406	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr15:74218425-74220724	ProgFib	skin:	n/a	n/a
9	MXI1	chr15:74217976-74222304	IMR90	lung:	n/a	n/a
10	POLR2A	chr15:74218504-74220498	IMR90	lung:	n/a	n/a
11	POLR2A	chr15:74218128-74220905	MCF-7	breast:	n/a	n/a
12	POLR2A	chr15:74218562-74220432	MCF-7	breast:	n/a	n/a
13	CTCF	chr15:74219260-74219410	SAEC	small airway:	n/a	n/a
14	MAX	chr15:74218460-74220440	ECC-1	luminal epithelium:	n/a	n/a
15	TAF1	chr15:74218531-74219754	ECC-1	luminal epithelium:	n/a	n/a
16	MAX	chr15:74218518-74220264	ECC-1	luminal epithelium:	n/a	n/a
17	EP300	chr15:74218396-74220477	ECC-1	luminal epithelium:	n/a	chr15:74218605-74218618
18	POLR2A	chr15:74218273-74219818	U87	brain:	n/a	n/a
19	POLR2A	chr15:74218435-74220511	MCF-7	breast:	n/a	n/a
20	TCF12	chr15:74218425-74220518	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr15:74218587-74219799	ECC-1	luminal epithelium:	n/a	n/a
22	NFIC	chr15:74218376-74219781	ECC-1	luminal epithelium:	n/a	n/a
23	TCF12	chr15:74218309-74219834	ECC-1	luminal epithelium:	n/a	n/a
24	SIN3A	chr15:74218455-74220335	H1-hESC	embryonic stem cell:	n/a	n/a
25	SIN3AK20	chr15:74219009-74220314	PANC-1	pancreas:	n/a	n/a
26	CEBPB	chr15:74219122-74219348	IMR90	lung:	n/a	n/a
27	NR2F2	chr15:74218457-74220947	MCF-7	breast:	n/a	n/a
28	CEBPB	chr15:74219145-74219413	HepG2	liver:	n/a	n/a
29	POLR2A	chr15:74217872-74240199	U87	brain:	n/a	n/a
30	CHD1	chr15:74217903-74221545	IMR90	lung:	n/a	n/a
31	CEBPB	chr15:74219110-74219447	HepG2	liver:	n/a	n/a
32	MAX	chr15:74218533-74219328	MCF-7	breast:	n/a	n/a
33	POLR2A	chr15:74215819-74242527	U87	brain:	n/a	n/a
34	MAX	chr15:74218529-74219812	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74217306..74220336-chr15:74236509..74239961,4	MCF-7	breast:
2	chr15:72523731..72525453-chr15:74219224..74220936,2	MCF-7	breast:
3	chr15:74163735..74170089-chr15:74218002..74222715,6	MCF-7	breast:

No data

Variant related genes	Relation type
LOXL1-AS1	TF binding region
ENSG00000260624	Chromatin interaction
ENSG00000167139	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3324978	chr15:74218524-74221272	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74215400-74219400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr15:74215800-74219400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:74216000-74219400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr15:74216000-74219400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:74216800-74220800	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr15:74217200-74219600	Weak transcription	A549	lung
7	chr15:74217800-74220400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:74218000-74219400	Enhancers	Small Intestine	intestine
9	chr15:74218000-74220000	Weak transcription	Hela-S3	cervix
10	chr15:74218200-74219400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:74218200-74219400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:74218200-74221200	Active TSS	Aorta	Aorta
13	chr15:74218400-74219600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr15:74218400-74219600	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr15:74218400-74219800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:74218400-74219800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:74218400-74219800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:74218400-74219800	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr15:74218400-74219800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr15:74218400-74220400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr15:74218400-74220600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:74218400-74220800	Flanking Active TSS	HMEC	breast
23	chr15:74218400-74221000	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr15:74218400-74221200	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr15:74218400-74221200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr15:74218600-74220200	Active TSS	Colon Smooth Muscle	Colon
27	chr15:74218600-74220400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:74218600-74220400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:74218600-74220400	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr15:74218600-74220400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr15:74218600-74220400	Weak transcription	Fetal Heart	heart
32	chr15:74218600-74220600	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr15:74218600-74220600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:74218600-74220600	Active TSS	NHLF	lung
35	chr15:74218600-74220600	Active TSS	Osteobl	bone
36	chr15:74218600-74220800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:74218600-74221000	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr15:74218600-74221200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:74218600-74221200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:74218600-74221200	Active TSS	HSMM	muscle
41	chr15:74218600-74221200	Active TSS	NH-A	brain
42	chr15:74218600-74221200	Active TSS	NHDF-Ad	bronchial
43	chr15:74218600-74221400	Active TSS	HSMMtube	muscle
44	chr15:74218800-74219400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr15:74218800-74219400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr15:74218800-74219400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr15:74218800-74219400	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:74218800-74219400	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
49	chr15:74218800-74219400	Flanking Active TSS	Esophagus	oesophagus
50	chr15:74218800-74219600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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