Variant report

Variant	rs1482637
Chromosome Location	chr3:83050556-83050557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1032024	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1384420	0.97[EUR][1000 genomes]
rs1384432	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1482628	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1482629	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1482644	0.87[EUR][1000 genomes]
rs1871947	0.80[EUR][1000 genomes]
rs2035427	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3968316	0.87[EUR][1000 genomes]
rs4256143	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4856424	0.97[EUR][1000 genomes]
rs6768887	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6769602	0.80[EUR][1000 genomes]
rs6775903	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7620162	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7622155	0.84[EUR][1000 genomes]
rs7622360	0.83[EUR][1000 genomes]
rs7631747	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7632969	0.87[EUR][1000 genomes]
rs9309926	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs970117	0.83[EUR][1000 genomes]
rs9865138	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9882315	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv877048	chr3:82869089-83324183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877051	chr3:82888913-83324183	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877054	chr3:82937940-83089596	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004114	chr3:83032534-83062217	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv877055	chr3:83039277-83324183	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1003667	chr3:83041379-83203406	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83048200-83052200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:83048400-83054800	Enhancers	Dnd41	blood
3	chr3:83049000-83054800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:83049400-83052200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:83049400-83053200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:83049800-83052200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:83050000-83051400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:83050000-83052200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:83050000-83060800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:83050400-83050600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:83050400-83050600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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