Variant report

Variant	rs1871947
Chromosome Location	chr3:82987800-82987801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1032024	0.86[EUR][1000 genomes]
rs1384420	0.84[EUR][1000 genomes]
rs1384432	0.86[EUR][1000 genomes]
rs1482628	0.86[EUR][1000 genomes]
rs1482629	0.86[EUR][1000 genomes]
rs1482637	0.80[EUR][1000 genomes]
rs2035427	0.86[EUR][1000 genomes]
rs4856424	0.84[EUR][1000 genomes]
rs6768887	0.84[EUR][1000 genomes]
rs6769602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6775903	0.86[EUR][1000 genomes]
rs7620162	0.86[EUR][1000 genomes]
rs7622360	0.96[EUR][1000 genomes]
rs7631747	0.86[EUR][1000 genomes]
rs9309926	0.86[EUR][1000 genomes]
rs970117	0.96[EUR][1000 genomes]
rs9865138	0.80[EUR][1000 genomes]
rs9882315	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv877047	chr3:82869089-83027612	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877048	chr3:82869089-83324183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877050	chr3:82873604-83012312	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877051	chr3:82888913-83324183	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1000344	chr3:82903854-83046837	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877052	chr3:82906400-83027612	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590805	chr3:82906400-83039277	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877053	chr3:82918947-83012312	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv460735	chr3:82923361-83022387	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv590806	chr3:82923361-83022387	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877054	chr3:82937940-83089596	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82987800-82989200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:82987800-82989600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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