Variant report

Variant	rs1482654
Chromosome Location	chr3:43508606-43508607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11130007	1.00[ASN][1000 genomes]
rs1600943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372434	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36156902	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43496000-43509000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:43496800-43509400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:43497000-43514800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:43497000-43514800	Weak transcription	Gastric	stomach
6	chr3:43497000-43539400	Weak transcription	HSMM	muscle
7	chr3:43497200-43519600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:43497200-43520000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:43497200-43532600	Weak transcription	K562	blood
10	chr3:43503600-43514800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:43504800-43509000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:43504800-43509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:43504800-43509800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:43504800-43514800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:43504800-43514800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:43505000-43509600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:43505400-43518800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:43505600-43511600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:43506600-43522800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:43507000-43509200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:43507200-43509400	Weak transcription	HUVEC	blood vessel
23	chr3:43508600-43521800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links