Variant report

Variant	rs1825228
Chromosome Location	chr3:43527507-43527508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11130007	1.00[ASN][1000 genomes]
rs1482654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372434	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36156902	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43497200-43532600	Weak transcription	K562	blood
4	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:43515000-43532400	Weak transcription	Pancreas	Pancrea
6	chr3:43519600-43539000	Weak transcription	Right Atrium	heart
7	chr3:43519800-43538200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:43522000-43532200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:43522200-43538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:43522200-43538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
12	chr3:43523200-43527800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:43523400-43531600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:43524200-43539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:43524400-43531000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:43524600-43532400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:43525800-43527800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:43526000-43560800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:43526200-43531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:43526400-43538400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:43526600-43527600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:43526800-43527600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:43527000-43532200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:43527000-43532200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:43527000-43539000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:43527200-43527800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr3:43527200-43560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:43527400-43527800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:43527400-43527800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:43527400-43527800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr3:43527400-43532200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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