Variant report

Variant	rs148299845
Chromosome Location	chr18:45371436-45371437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45370062..45371817-chr18:45453252..45455227,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1062894	chr18:45368587-45387738	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1066394	chr18:45368587-45394386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1060581	chr18:45368587-45397623	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1057525	chr18:45368587-45407405	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv1064282	chr18:45369857-45404768	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45342200-45384200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:45344000-45373000	Weak transcription	Pancreas	Pancrea
3	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:45347600-45381800	Weak transcription	Right Ventricle	heart
5	chr18:45351000-45374600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:45353000-45381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:45354600-45381800	Weak transcription	Fetal Intestine Small	intestine
8	chr18:45355600-45375600	Strong transcription	Hela-S3	cervix
9	chr18:45355600-45375800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr18:45355600-45376200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:45356000-45378000	Weak transcription	Small Intestine	intestine
12	chr18:45356200-45377800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:45356200-45384000	Weak transcription	Spleen	Spleen
14	chr18:45356600-45376200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr18:45357200-45373200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr18:45358600-45376400	Strong transcription	Dnd41	blood
17	chr18:45358800-45382400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr18:45359000-45374400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr18:45359800-45375600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr18:45359800-45375600	Strong transcription	Fetal Thymus	thymus
21	chr18:45360000-45373200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:45360000-45375400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr18:45360000-45375600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr18:45361400-45375600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr18:45361400-45375600	Strong transcription	A549	lung
26	chr18:45361400-45376000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr18:45362400-45373000	Strong transcription	Placenta	Placenta
28	chr18:45362400-45375200	Strong transcription	Primary B cells from cord blood	blood
29	chr18:45362400-45375600	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr18:45362600-45371800	Strong transcription	Liver	Liver
31	chr18:45362600-45372400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr18:45362600-45375600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr18:45363000-45375800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr18:45363400-45373600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr18:45363800-45375600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr18:45363800-45375600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr18:45363800-45376400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr18:45364000-45372200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr18:45364000-45375400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr18:45364400-45375600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr18:45364600-45375600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr18:45364600-45376200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr18:45364800-45372400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr18:45364800-45372600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr18:45365000-45373200	Strong transcription	Fetal Lung	lung
46	chr18:45365000-45373400	Strong transcription	Adipose Nuclei	Adipose
47	chr18:45365200-45373600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr18:45365200-45375800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr18:45365400-45372400	Strong transcription	HepG2	liver
50	chr18:45365400-45375000	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links