Variant report

Variant	rs1483500
Chromosome Location	chr11:104034296-104034297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10750684	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10750685	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791675	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1681464	0.88[ASN][1000 genomes]
rs2128806	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2170719	0.88[ASN][1000 genomes]
rs361269	0.81[ASN][1000 genomes]
rs361270	0.81[ASN][1000 genomes]
rs361273	0.81[ASN][1000 genomes]
rs3809021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123807	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7936429	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104030800-104035400	Active TSS	Ovary	ovary
2	chr11:104032400-104035400	Active TSS	Aorta	Aorta
3	chr11:104032800-104034400	Active TSS	Brain Germinal Matrix	brain
4	chr11:104032800-104035200	Active TSS	A549	lung
5	chr11:104033200-104035400	Active TSS	Right Atrium	heart
6	chr11:104033400-104034600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
7	chr11:104033400-104034800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:104033400-104034800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:104033400-104034800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr11:104033400-104035200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr11:104033400-104035400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:104033400-104035400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:104033400-104035400	Active TSS	Fetal Kidney	kidney
14	chr11:104033400-104035400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:104033400-104035400	Active TSS	Right Ventricle	heart
16	chr11:104033400-104035800	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr11:104033600-104034400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:104033600-104034400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr11:104033600-104034400	Bivalent/Poised TSS	NHDF-Ad	bronchial
20	chr11:104033600-104034600	Flanking Active TSS	HUVEC	blood vessel
21	chr11:104033600-104034800	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr11:104033600-104034800	Enhancers	Small Intestine	intestine
23	chr11:104033600-104035000	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr11:104033600-104035200	Active TSS	Psoas Muscle	Psoas
25	chr11:104033600-104035200	Active TSS	Rectal Smooth Muscle	rectum
26	chr11:104033600-104035400	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:104033600-104035400	Active TSS	Brain Hippocampus Middle	brain
28	chr11:104033600-104035400	Active TSS	Fetal Stomach	stomach
29	chr11:104033600-104035400	Active TSS	Pancreas	Pancrea
30	chr11:104033600-104035600	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr11:104033600-104035800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr11:104033600-104036000	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr11:104033600-104036000	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr11:104033800-104034400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
35	chr11:104033800-104034600	Enhancers	Spleen	Spleen
36	chr11:104033800-104034800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:104033800-104034800	Active TSS	Stomach Smooth Muscle	stomach
38	chr11:104033800-104035000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:104033800-104035000	Bivalent/Poised TSS	Thymus	Thymus
40	chr11:104033800-104035200	Active TSS	H1 Cell Line	embryonic stem cell
41	chr11:104033800-104035200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr11:104033800-104035200	Active TSS	Fetal Heart	heart
43	chr11:104033800-104035400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:104033800-104035400	Active TSS	Muscle Satellite Cultured Cells	--
45	chr11:104033800-104035400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:104033800-104035400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr11:104033800-104035600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:104034000-104034400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:104034000-104034400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:104034000-104034400	Flanking Active TSS	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links