Variant report

Variant	rs3809021
Chromosome Location	chr11:104035622-104035623
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10750684	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10750685	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791671	0.81[TSI][hapmap]
rs10791675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1681464	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.88[ASN][1000 genomes]
rs2128806	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2170719	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs361268	0.85[CEU][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs361269	0.81[ASN][1000 genomes]
rs361270	0.81[ASN][1000 genomes]
rs361273	0.85[CEU][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs361301	0.85[CEU][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs4755010	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs551198	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs551300	0.85[CEU][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs7123807	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7936429	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7946884	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104033400-104035800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr11:104033600-104035800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:104033600-104036000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:104033600-104036000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:104035400-104035800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:104035400-104035800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:104035400-104035800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:104035400-104035800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:104035400-104035800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:104035400-104035800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:104035400-104035800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:104035400-104035800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:104035400-104035800	Enhancers	Esophagus	oesophagus
14	chr11:104035400-104035800	Enhancers	Fetal Heart	heart
15	chr11:104035400-104035800	Bivalent Enhancer	Fetal Intestine Large	intestine
16	chr11:104035400-104035800	Enhancers	Pancreas	Pancrea
17	chr11:104035400-104036000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:104035400-104036000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:104035400-104036000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:104035400-104039400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:104035600-104035800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr11:104035600-104035800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr11:104035600-104035800	Enhancers	A549	lung
24	chr11:104035600-104036000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr11:104035600-104036000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:104035600-104036000	Flanking Active TSS	Brain Germinal Matrix	brain

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