Variant report

Variant	rs1483836
Chromosome Location	chr3:25378658-25378659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12492794	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1351785	0.82[EUR][1000 genomes]
rs1473452	0.82[EUR][1000 genomes]
rs6550967	0.81[JPT][hapmap]
rs6787363	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7614710	0.82[EUR][1000 genomes]
rs7623744	0.82[EUR][1000 genomes]
rs7636904	0.82[EUR][1000 genomes]
rs7648812	0.82[EUR][1000 genomes]
rs8179975	0.80[EUR][1000 genomes]
rs9310779	0.82[EUR][1000 genomes]
rs9835679	0.82[EUR][1000 genomes]
rs9853460	0.82[EUR][1000 genomes]
rs9860987	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25377400-25379800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:25378200-25380800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:25378400-25379600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:25378600-25380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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