Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1016786	0.81[ASN][1000 genomes]
rs1016787	0.81[ASN][1000 genomes]
rs1026929	0.81[ASN][1000 genomes]
rs11129194	0.85[ASN][1000 genomes]
rs11129195	0.85[ASN][1000 genomes]
rs11129196	0.96[ASN][1000 genomes]
rs11920003	0.93[ASN][1000 genomes]
rs11920829	0.94[ASN][1000 genomes]
rs13073683	0.91[ASN][1000 genomes]
rs1351785	0.87[EUR][1000 genomes]
rs1473452	0.87[EUR][1000 genomes]
rs1483830	0.96[ASN][1000 genomes]
rs1483836	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4681017	0.96[ASN][1000 genomes]
rs4681018	0.95[ASN][1000 genomes]
rs4681047	0.96[ASN][1000 genomes]
rs4681048	0.96[ASN][1000 genomes]
rs6550964	0.95[ASN][1000 genomes]
rs6550965	0.96[ASN][1000 genomes]
rs6550967	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs6775569	0.86[ASN][1000 genomes]
rs6787363	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs729236	0.85[ASN][1000 genomes]
rs7613965	0.96[ASN][1000 genomes]
rs7614710	0.87[EUR][1000 genomes]
rs7623744	0.87[EUR][1000 genomes]
rs7636904	0.87[EUR][1000 genomes]
rs7648812	0.87[EUR][1000 genomes]
rs8179975	0.86[EUR][1000 genomes]
rs922942	0.81[ASN][1000 genomes]
rs922943	0.81[ASN][1000 genomes]
rs9310778	0.81[ASN][1000 genomes]
rs9310779	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9835679	0.87[EUR][1000 genomes]
rs9853460	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9860987	0.87[EUR][1000 genomes]
rs9861454	0.95[ASN][1000 genomes]
rs9880591	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25377400-25379800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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