Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10005083	0.85[ASN][1000 genomes]
rs10028144	0.85[ASN][1000 genomes]
rs1038112	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12498838	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12508070	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509499	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510458	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510908	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1485829	0.95[ASN][1000 genomes]
rs16872987	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28374301	0.83[ASN][1000 genomes]
rs28677984	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28727493	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3172708	0.91[ASN][1000 genomes]
rs4146270	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61793654	0.95[ASN][1000 genomes]
rs61793656	0.91[ASN][1000 genomes]
rs6849406	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684246	0.85[ASN][1000 genomes]
rs7695833	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9884116	0.92[ASN][1000 genomes]
rs9884549	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22694000-22696600	Flanking Active TSS	Liver	Liver
2	chr4:22694200-22696400	Active TSS	Fetal Intestine Small	intestine
3	chr4:22694400-22695400	Active TSS	Fetal Intestine Large	intestine
4	chr4:22694400-22697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:22694400-22699200	Active TSS	Duodenum Mucosa	Duodenum
6	chr4:22694600-22695200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr4:22694800-22695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:22694800-22695400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr4:22694800-22696800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:22695000-22697200	Weak transcription	HepG2	liver
11	chr4:22695000-22697800	Weak transcription	Rectal Mucosa Donor 29	rectum

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