Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10005083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10028144	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1038112	0.81[ASN][1000 genomes]
rs11942704	0.96[AFR][1000 genomes]
rs12498838	0.81[ASN][1000 genomes]
rs12506103	0.84[ASN][1000 genomes]
rs12508070	0.83[ASN][1000 genomes]
rs12509499	0.81[ASN][1000 genomes]
rs12510458	0.83[ASN][1000 genomes]
rs12510908	0.83[ASN][1000 genomes]
rs1485826	0.96[AFR][1000 genomes]
rs1485832	0.83[ASN][1000 genomes]
rs16872987	0.82[ASN][1000 genomes]
rs28677984	0.83[ASN][1000 genomes]
rs28727493	0.83[ASN][1000 genomes]
rs4146270	0.83[ASN][1000 genomes]
rs6849406	0.83[ASN][1000 genomes]
rs7657828	0.83[ASN][1000 genomes]
rs7684246	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695833	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22682200-22694600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:22682400-22692200	Weak transcription	Liver	Liver
3	chr4:22682600-22691000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr4:22685200-22693600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:22686200-22692600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:22688200-22690000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:22689400-22689800	Enhancers	Primary T cells from cord blood	blood
8	chr4:22689400-22690200	Enhancers	Fetal Thymus	thymus
9	chr4:22689600-22690400	Enhancers	HSMM	muscle

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